PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID NNU_024912-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Proteales; Nelumbonaceae; Nelumbo
Family C2H2
Protein Properties Length: 277aa    MW: 30136.5 Da    PI: 7.9582
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
NNU_024912-RAgenomeCASView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00022103125123
                    EEETTTTEEESSHHHHHHHHHHT CS
        zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                    ++C++C + F ++  L  H++ H
  NNU_024912-RA 103 FSCNYCQRKFYSSQALGGHQNAH 125
                    89*****************9988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.98E-6100130No hitNo description
PROSITE profilePS5015711.427103130IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MEPHKAEPCL SESSSIISVS EAQLSIDGSD NKKQKEERQH HSEGEDNLRE ETSLDLLLDL  60
SLSHKDSSHG SKSELNLIDC LNVGAPETLP GIPQRTDAEP RVFSCNYCQR KFYSSQALGG  120
HQNAHKRERT LAKRGHRMGV AAAAFGHSQT PFHRFSSLAS LPLHGSLNRS LGIQVHSMIH  180
KSSLQPSSGS AHLNSHHGWS RPPINQQPAI GKLAMEDYYH VGLPAGSSPK GGAARFDTSR  240
SLNSPSDGAI GGCWWPGSGR CKSNQEELQK LDLSLKL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010245557.10.0PREDICTED: zinc finger protein 3-like
SwissprotQ392627e-45ZFP3_ARATH; Zinc finger protein 3
TrEMBLF6HXT41e-101F6HXT4_VITVI; Putative uncharacterized protein
STRINGVIT_09s0002g09080.t011e-100(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.17e-48C2H2 family protein